I often get questions on how to prune crape myrtles. I’m asked “how do I keep the branches from hanging so low if I’m not supposed to top them?” So the answer is in the question. If lower branches are the problem, why would you prune the upright limbs?
In August, when crape myrtles are hanging full of blooms and seeds, especially after a rain, the limbs can drape low, especially on the fauirei crosses. To prune, remove the low hanging branches, either at the main trunk or at a branch crotch. Do not chop them off haphazardly, leaving unsightly nubs. Do this every year until the canopy is up and over where you want it to be.
This method is simple, but can be more complicated when a tree has previously been topped, causing many, small branches to form at the pruning site. Using hand clippers, remove most of the cluster, leaving ones that grow more parallel to the ground (taking out the weepy ones and very upright ones). This is a slow process that takes several years to correct.
In between serious prunings, it is fine to take hand clippers and remove any low-hanging flower/seed heads. Removing the extra weight from the branch will cause it to stand more parallel to the ground, rather than weep.